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Topic Modeling

Large language models encode clinical knowledge

Karan Singhal, Shekoofeh Azizi, Tao Tu, S. Sara Mahdavi, Jason Lee, Hyung Won Chung, Nathan Scales, Ajay Kumar Tanwani, Heather Cole-Lewis, Stephen Pfohl, Perry W. Payne, Martin Seneviratne, Paul Gamble, Christopher Kelly, Abubakr Babiker, Nathanael Schärli, Aakanksha Chowdhery, P. Mansfield, Dina Demner‐Fushman, Blaise Agüera y Arcas, Dale R. Webster, Greg S. Corrado, Yossi Matias, Katherine Chou, Juraj Gottweis, Nenad Tomašev, Yun Liu, Alvin Rajkomar, Joëlle Barral, Christopher Semturs, Alan Karthikesalingam, Vivek Natarajan

Topic ModelingArtificial Intelligence in Healthcare and EducationNatural Language Processing Techniques
Published July 12, 2023Read PDF ↗View on arXiv ↗

Abstract

Abstract Large language models (LLMs) have demonstrated impressive capabilities, but the bar for clinical applications is high. Attempts to assess the clinical knowledge of models typically rely on automated evaluations based on limited benchmarks. Here, to address these limitations, we present MultiMedQA, a benchmark combining six existing medical question answering datasets spanning professional medicine, research and consumer queries and a new dataset of medical questions searched online, HealthSearchQA. We propose a human evaluation framework for model answers along multiple axes including factuality, comprehension, reasoning, possible harm and bias. In addition, we evaluate Pathways Language Model 1 (PaLM, a 540-billion parameter LLM) and its instruction-tuned variant, Flan-PaLM 2 on MultiMedQA. Using a combination of prompting strategies, Flan-PaLM achieves state-of-the-art accuracy on every MultiMedQA multiple-choice dataset (MedQA 3 , MedMCQA 4 , PubMedQA 5 and Measuring Massive Multitask Language Understanding (MMLU) clinical topics 6 ), including 67.6% accuracy on MedQA (US Medical Licensing Exam-style questions), surpassing the prior state of the art by more than 17%. However, human evaluation reveals key gaps. To resolve this, we introduce instruction prompt tuning, a parameter-efficient approach for aligning LLMs to new domains using a few exemplars. The resulting model, Med-PaLM, performs encouragingly, but remains inferior to clinicians. We show that comprehension, knowledge recall and reasoning improve with model scale and instruction prompt tuning, suggesting the potential utility of LLMs in medicine. Our human evaluations reveal limitations of today’s models, reinforcing the importance of both evaluation frameworks and method development in creating safe, helpful LLMs for clinical applications.

Sourced from arXiv · Updated September 2, 2026

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Common questions

What is "Large language models encode clinical knowledge" about?

Abstract Large language models (LLMs) have demonstrated impressive capabilities, but the bar for clinical applications is high. Attempts to assess the clinical knowledge of models typically rely on automated evaluations based on limited benchmarks. Here, to address these limitati

Who wrote this paper?

Karan Singhal, Shekoofeh Azizi, Tao Tu, S. Sara Mahdavi, Jason Lee, Hyung Won Chung, Nathan Scales, Ajay Kumar Tanwani, Heather Cole-Lewis, Stephen Pfohl, Perry W. Payne, Martin Seneviratne, Paul Gamble, Christopher Kelly, Abubakr Babiker, Nathanael Schärli, Aakanksha Chowdhery, P. Mansfield, Dina Demner‐Fushman, Blaise Agüera y Arcas, Dale R. Webster, Greg S. Corrado, Yossi Matias, Katherine Chou, Juraj Gottweis, Nenad Tomašev, Yun Liu, Alvin Rajkomar, Joëlle Barral, Christopher Semturs, Alan Karthikesalingam, Vivek Natarajan

Where can I read the full paper?

The full text is available as a PDF on arXiv (linked above), published July 12, 2023.

Does this paper have a DOI?

Yes: https://doi.org/10.1038/s41586-023-06291-2.